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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19985.1KEGG: mms:mma_2015 ATP-binding component of cytochrome-related transport system; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase. (568 aa)    
Predicted Functional Partners:
ACS19986.1
KEGG: mms:mma_2016 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
0.999
ACS19983.1
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: mms:mma_2013 cytochrome bd-I oxidase subunit II.
 
  
 0.993
ACS19984.1
PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: mms:mma_2014 cytochrome bd-I oxidase subunit I.
 
  
 0.991
ACS19982.1
TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: mms:mma_2012 cyd operon protein YbgT.
 
  
 0.934
ACS19987.1
PFAM: acyltransferase 3; KEGG: ajs:Ajs_2806 acyltransferase 3.
       0.474
ACS19988.1
PFAM: 2-nitropropane dioxygenase NPD; KEGG: pol:Bpro_3140 2-nitropropane dioxygenase, NPD.
       0.405
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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