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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19987.1PFAM: acyltransferase 3; KEGG: ajs:Ajs_2806 acyltransferase 3. (370 aa)    
Predicted Functional Partners:
ACS17712.1
PFAM: Domain of unknown function DUF1854; KEGG: pna:Pnap_1008 hypothetical protein.
 
     0.717
ACS18643.1
KEGG: aav:Aave_0313 hypothetical protein.
  
     0.676
ACS19988.1
PFAM: 2-nitropropane dioxygenase NPD; KEGG: pol:Bpro_3140 2-nitropropane dioxygenase, NPD.
       0.670
ACS17711.1
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pna:Pnap_1007 ABC transporter related.
 
     0.669
ACS18420.1
KEGG: ajs:Ajs_0255 hypothetical protein.
  
     0.669
ACS17709.1
TIGRFAM: cyanophycin synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; RimK domain protein ATP-grasp; KEGG: mpt:Mpe_A1023 cyanphycin synthetase; Belongs to the MurCDEF family.
 
  
 0.598
ACS17649.1
KEGG: pol:Bpro_0670 hypothetical protein.
  
     0.591
ACS17402.1
KEGG: aav:Aave_4509 hypothetical protein.
  
     0.586
ACS21528.1
PFAM: VanZ family protein; KEGG: rfr:Rfer_3803 VanZ like protein.
 
     0.586
ACS20680.1
KEGG: bbr:BB2117 hypothetical protein.
  
     0.572
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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