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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19994.1PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pna:Pnap_1219 ATPase. (306 aa)    
Predicted Functional Partners:
ACS19996.1
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: pol:Bpro_3148 transglutaminase-like.
 
   
 0.904
ACS19995.1
PFAM: protein of unknown function DUF58; KEGG: aav:Aave_2162 hypothetical protein.
 
  
 0.898
ACS17893.1
PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3892 protein of unknown function DUF58.
  
 0.800
ACS19360.1
PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pol:Bpro_2415 ornithine decarboxylase.
   
 
 0.634
ACS19993.1
PFAM: histone deacetylase superfamily; KEGG: ajs:Ajs_2813 histone deacetylase superfamily protein.
       0.603
ACS19992.1
PFAM: MscS Mechanosensitive ion channel; KEGG: aav:Aave_2167 MscS mechanosensitive ion channel.
 
     0.579
ACS19997.1
TIGRFAM: lytic murein transglycosylase B; KEGG: pna:Pnap_1216 lytic murein transglycosylase B.
       0.547
ACS17892.1
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: pol:Bpro_3893 von Willebrand factor, type A.
 
  
 0.518
ACS19667.1
KEGG: mpt:Mpe_A3277 hypothetical protein.
 
  
 0.500
ACS19998.1
KEGG: dac:Daci_5253 hypothetical protein.
       0.449
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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