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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19995.1PFAM: protein of unknown function DUF58; KEGG: aav:Aave_2162 hypothetical protein. (323 aa)    
Predicted Functional Partners:
ACS19996.1
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: pol:Bpro_3148 transglutaminase-like.
 
  
 0.965
ACS19994.1
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pna:Pnap_1219 ATPase.
 
  
 0.898
ACS17794.1
PFAM: Pilus assembly protein PilP; KEGG: rfr:Rfer_2922 pilus assembly protein, PilQ.
 
     0.764
ACS17792.1
PFAM: Fimbrial assembly family protein; KEGG: pol:Bpro_0782 fimbrial assembly.
 
     0.761
ACS21716.1
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: rfr:Rfer_3861 peptidoglycan-binding LysM.
 
     0.756
ACS17791.1
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM.
 
     0.755
ACS18069.1
KEGG: aav:Aave_1218 putative transmembrane protein.
 
    0.754
ACS19476.1
PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ.
 
     0.754
ACS17793.1
PFAM: Pilus assembly protein PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO.
 
     0.748
ACS21719.1
KEGG: pol:Bpro_4643 protein of unknown function DUF1631.
  
     0.727
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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