close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS19996.1PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: pol:Bpro_3148 transglutaminase-like. (673 aa)    
Predicted Functional Partners:
ACS19995.1
PFAM: protein of unknown function DUF58; KEGG: aav:Aave_2162 hypothetical protein.
 
  
 0.965
ACS19994.1
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pna:Pnap_1219 ATPase.
 
   
 0.904
ACS19997.1
TIGRFAM: lytic murein transglycosylase B; KEGG: pna:Pnap_1216 lytic murein transglycosylase B.
       0.760
ACS21716.1
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: rfr:Rfer_3861 peptidoglycan-binding LysM.
  
   
 0.757
ACS17791.1
TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM.
 
     0.749
ACS17794.1
PFAM: Pilus assembly protein PilP; KEGG: rfr:Rfer_2922 pilus assembly protein, PilQ.
  
     0.749
ACS17792.1
PFAM: Fimbrial assembly family protein; KEGG: pol:Bpro_0782 fimbrial assembly.
  
     0.745
ACS19476.1
PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ.
 
     0.740
ACS17793.1
PFAM: Pilus assembly protein PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO.
  
     0.735
ACS21227.1
CheA signal transduction histidine kinase; PFAM: response regulator receiver; Hpt domain protein; Signal transducing histidine kinase homodimeric; CheW domain protein; ATP-binding region ATPase domain protein; SMART: response regulator receiver; Hpt domain protein; CheW domain protein; ATP-binding region ATPase domain protein; KEGG: pol:Bpro_1140 CheA signal transduction histidine kinases.
 
     0.695
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.