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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20002.1PFAM: ABC-2 type transporter; KEGG: rfr:Rfer_3970 hypothetical protein. (385 aa)    
Predicted Functional Partners:
ACS20003.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3971 ABC transporter related.
 
  
 0.955
ACS20001.1
PFAM: phosphopantetheine-binding; KEGG: dar:Daro_2373 acyl carrier protein.
 
  
 0.946
ACS20004.1
KEGG: rfr:Rfer_3972 hypothetical protein.
 
     0.875
ACS20005.1
KEGG: rfr:Rfer_3973 hypothetical protein.
 
     0.875
ACS20007.1
KEGG: rfr:Rfer_3975 hypothetical protein.
 
     0.870
ACS20000.1
PFAM: Beta-ketoacyl synthase; KEGG: rfr:Rfer_3977 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
   
 0.867
ACS20006.1
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: rfr:Rfer_3974 3-oxoacyl-(acyl carrier protein) synthase III.
 
     0.864
ACS19999.1
KEGG: rfr:Rfer_3976 hypothetical protein.
     
 0.803
ACS20136.1
KEGG: har:HEAR2872 hypothetical protein.
  
     0.647
ACS18803.1
KEGG: har:HEAR2872 hypothetical protein.
  
     0.643
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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