close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20008.1KEGG: dac:Daci_1030 extracellular solute-binding protein. (577 aa)    
Predicted Functional Partners:
ACS20010.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0379 binding-protein-dependent transport systems inner membrane component.
 
 0.994
ACS20013.1
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_0384 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.985
ACS20011.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_1027 binding-protein-dependent transport systems inner membrane component.
 
 0.984
ACS20012.1
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0479 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.984
ACS20009.1
KEGG: rfr:Rfer_3672 putative integral membrane protein.
 
    0.913
ACS20015.1
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; regulatory protein Crp; KEGG: aav:Aave_0603 DeoR family transcriptional regulator.
 
   
 0.613
ACS22291.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_2612 binding-protein-dependent transport systems inner membrane component.
 
 
 0.596
ACS17761.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_5594 binding-protein-dependent transport systems inner membrane component.
 
 
 0.595
ACS19968.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_3718 sugar ABC transporter, permease protein, putative.
  
 
 0.568
ugpE
Binding-protein-dependent transport systems inner membrane component; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
  
 
 0.538
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.