Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACS20019.1PFAM: protein of unknown function DUF403; KEGG: pol:Bpro_3156 protein of unknown function DUF403. (318 aa)    
Predicted Functional Partners:
ACS20020.1
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pna:Pnap_1206 hypothetical protein.
    0.993
ACS20023.1
PFAM: protein of unknown function DUF404; protein of unknown function DUF403; protein of unknown function DUF407; KEGG: rfr:Rfer_2497 hypothetical protein.
 
    0.958
ACS20024.1
PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: pol:Bpro_3161 transglutaminase-like.
  
 0.935
ACS20207.1
PFAM: 20S proteasome A and B subunits; KEGG: pna:Pnap_1358 20S proteasome, A and B subunits.
 
    0.871
ACS20022.1
PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: pol:Bpro_3159 transglutaminase-like.
 
  
 0.862
ACS19604.1
PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: pna:Pnap_1061 transglutaminase domain-containing protein.
 
  
 0.853
ACS17162.1
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: mpt:Mpe_A0053 transglutaminase-like domain-containing protein.
 
  
 0.830
ACS20021.1
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: rfr:Rfer_2476 DNA internalization-related competence protein ComEC/Rec2.
       0.691
ACS17101.1
KEGG: mpt:Mpe_A3629 hypothetical protein.
 
     0.446
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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