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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20039.1KEGG: dol:Dole_1972 hypothetical protein. (530 aa)    
Predicted Functional Partners:
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
   0.588
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: aav:Aave_3674 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.588
rplC
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
   0.585
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: vei:Veis_1757 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.581
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: dac:Daci_5366 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.579
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.578
cyaY
Iron donor protein CyaY; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.
    
   0.578
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: vei:Veis_3939 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.578
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.578
msrB
KEGG: aav:Aave_2948 methionine-R-sulfoxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
    
   0.578
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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