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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20040.1KEGG: smt:Smal_1708 hypothetical protein. (367 aa)    
Predicted Functional Partners:
ACS19802.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta-ketoacyl synthase; aminotransferase class-III; Acyl transferase; phosphopantetheine-binding; KEGG: bph:Bphy_1672 amino acid adenylation domain-containing protein.
 
  
 0.553
ACS20039.1
KEGG: dol:Dole_1972 hypothetical protein.
     
 0.516
ACS18323.1
KEGG: mms:mma_1622 hypothetical protein.
 
    0.491
ACS20361.1
PFAM: KR domain protein; Beta-ketoacyl synthase; Acyl transferase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: aav:Aave_3732 beta-ketoacyl synthase.
 
  
 0.451
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
 
 
 
 0.421
ACS20038.1
PFAM: isochorismatase hydrolase; KEGG: vfm:VFMJ11_A0729 isochorismatase hydrolase.
  
    0.401
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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