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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20054.1PFAM: Cupin 4 family protein; KEGG: aav:Aave_1332 cupin 4 family protein. (381 aa)    
Predicted Functional Partners:
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.819
ACS20053.1
KEGG: rfr:Rfer_2643 hypothetical protein.
       0.814
ACS20055.1
KEGG: dia:Dtpsy_0919 fkbp-type peptidyl-prolyl cis-trans isomerase.
       0.649
ACS20170.1
PFAM: protein of unknown function DUF615; KEGG: dia:Dtpsy_0970 protein of unknown function DUF615; Belongs to the UPF0307 family.
  
     0.540
ACS20052.1
KEGG: ajs:Ajs_1007 hypothetical protein.
       0.536
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
    0.506
ACS16918.1
KEGG: aav:Aave_0265 hypothetical protein.
  
     0.481
ACS17094.1
TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: dia:Dtpsy_3257 benzoate transporter.
  
    0.430
ACS17800.1
PFAM: protein of unknown function DUF1415; KEGG: aav:Aave_1005 hypothetical protein.
  
     0.408
argS
KEGG: rfr:Rfer_0773 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
   
    0.400
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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