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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDTyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (303 aa)    
Predicted Functional Partners:
ACS20074.1
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0989 hypothetical protein.
       0.634
ACS21006.1
KEGG: rfr:Rfer_1678 ComF family protein.
 
    0.618
ACS17936.1
PFAM: cell divisionFtsK/SpoIIIE; KEGG: aav:Aave_3426 DNA translocase FtsK.
 
   
 0.611
ACS20076.1
PFAM: conserved hypothetical protein; KEGG: dia:Dtpsy_0902 hypothetical protein.
       0.576
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
   
 0.562
ACS16711.1
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: rfr:Rfer_0051 cobyrinic acid a,c-diamide synthase.
 
   
 0.558
ACS22400.1
parB-like partition protein; KEGG: bbt:BBta_p0015 putative ParB-like (KorB) partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KorB domain protein; SMART: ParB domain protein nuclease; Belongs to the ParB family.
 
  
 0.524
ACS20073.1
PFAM: regulatory protein TetR; KEGG: mms:mma_0920 TetR family transcriptional regulator.
     
 0.518
ACS22401.1
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: abo:ABO_2074 ParA family protein.
 
   
 0.513
ACS18267.1
PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pna:Pnap_2794 prephenate dehydrogenase.
  
    0.503
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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