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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20089.1PFAM: Phytanoyl-CoA dioxygenase; KEGG: pol:Bpro_1714 phytanoyl-CoA dioxygenase. (301 aa)    
Predicted Functional Partners:
ACS20090.1
PFAM: oxidoreductase domain protein; SAF domain protein; homoserine dehydrogenase NAD-binding; dihydrodipicolinate reductase; KEGG: pol:Bpro_1713 oxidoreductase-like.
 
     0.838
ACS20088.1
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_1715 transcriptional regulator, GntR family.
       0.775
ACS20087.1
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pol:Bpro_3215 pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
       0.543
ACS19802.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta-ketoacyl synthase; aminotransferase class-III; Acyl transferase; phosphopantetheine-binding; KEGG: bph:Bphy_1672 amino acid adenylation domain-containing protein.
  
  
 0.533
ACS20358.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: aav:Aave_3729 amino acid adenylation domain-containing protein.
  
  
 0.517
ACS20091.1
PFAM: YCII-related; KEGG: ara:Arad_3753 hypothetical protein.
       0.482
ACS20092.1
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: mlo:mlr4613 ECF family RNA polymerase sigma factor.
       0.482
ACS17192.1
PFAM: Methyltransferase type 11; TPR repeat-containing protein; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: lch:Lcho_4081 methyltransferase type 12.
 
  
 0.481
ACS22116.1
KEGG: xcv:XCV0819 putative CcdB cytotoxin-like protein.
  
     0.436
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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