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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20092.1Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: mlo:mlr4613 ECF family RNA polymerase sigma factor. (409 aa)    
Predicted Functional Partners:
ACS20091.1
PFAM: YCII-related; KEGG: ara:Arad_3753 hypothetical protein.
 
     0.953
ACS18110.1
PFAM: YCII-related; KEGG: rpb:RPB_1804 DGPF protein.
 
     0.789
ACS18109.1
PFAM: YCII-related; KEGG: scl:sce6416 hypothetical protein.
 
     0.787
ACS20088.1
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_1715 transcriptional regulator, GntR family.
       0.482
ACS20089.1
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pol:Bpro_1714 phytanoyl-CoA dioxygenase.
       0.482
ACS20090.1
PFAM: oxidoreductase domain protein; SAF domain protein; homoserine dehydrogenase NAD-binding; dihydrodipicolinate reductase; KEGG: pol:Bpro_1713 oxidoreductase-like.
       0.482
ACS18836.1
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ade:Adeh_2482 glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.480
ACS22345.1
PFAM: bifunctional deaminase-reductase domain protein; KEGG: rfr:Rfer_2843 bifunctional deaminase-reductase-like.
 
     0.445
ACS22760.1
PFAM: bifunctional deaminase-reductase domain protein; KEGG: cvi:CV_3295 hypothetical protein.
 
     0.409
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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