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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20093.1PFAM: beta-lactamase; KEGG: sus:Acid_7087 beta-lactamase. (474 aa)    
Predicted Functional Partners:
ACS20094.1
PFAM: protein of unknown function DUF214; KEGG: pna:Pnap_1153 hypothetical protein.
     
 0.627
ACS19165.1
PFAM: beta-lactamase; KEGG: reh:H16_B0553 beta-lactamase class C.
  
     0.605
ACS17929.1
PFAM: peptidase M48 Ste24p; KEGG: pol:Bpro_3806 peptidase M48, Ste24p.
 
   
 0.546
ACS21072.1
KEGG: dac:Daci_2082 hypothetical protein.
  
     0.544
ACS17048.1
KEGG: mpo:Mpop_0843 hypothetical protein.
  
     0.525
ACS16835.1
KEGG: cja:CJA_0124 hypothetical protein.
  
     0.523
ACS21383.1
KEGG: sbn:Sbal195_2514 hypothetical protein.
  
     0.505
ACS16920.1
PFAM: O-antigen polymerase; KEGG: har:HEAR0457 hypothetical protein.
  
     0.497
ACS21916.1
Putative membrane protein involved in toxin uptake; KEGG: dac:Daci_2082 hypothetical protein.
  
     0.497
ACS17217.1
Hypothetical protein; KEGG: eba:ebA1686 serine/threonine protein kinase.
  
     0.485
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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