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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20110.1PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related. (594 aa)    
Predicted Functional Partners:
ACS22347.1
PFAM: manganese and iron superoxide dismutase; SMART: Rhodanese domain protein; KEGG: pol:Bpro_2502 manganese and iron superoxide dismutase.
  
 
 0.763
ACS21068.1
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: dac:Daci_2079 ABC transporter related.
 
 
 
0.712
ACS17476.1
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pna:Pnap_3460 ABC transporter related.
  
 
0.685
ACS21206.1
KEGG: ppw:PputW619_4382 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
 
 
0.674
ACS16813.1
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pna:Pnap_0112 ATPase central domain-containing protein.
 
 
 0.596
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.587
ACS20109.1
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: pol:Bpro_3237 transcriptional regulator, MarR family.
  
  
 0.581
ACS21223.1
Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: aav:Aave_0906 deoxyribodipyrimidine photo-lyase type I.
   
 
 0.578
ACS17427.1
PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; KEGG: gbe:GbCGDNIH1_0743 glycosyltransferase.
  
 
 0.574
ACS20108.1
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3236 RND efflux system, outer membrane lipoprotein, NodT.
     
 0.566
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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