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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20158.1KEGG: aav:Aave_2091 GatB/YqeY domain-containing protein. (150 aa)    
Predicted Functional Partners:
rpsU
TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: dia:Dtpsy_2347 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.971
ACS20159.1
PFAM: NUDIX hydrolase; KEGG: pen:PSEEN3674 hydrolase, MutT/NUDIX family; Belongs to the Nudix hydrolase family.
  
    0.782
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
    0.722
ACS18947.1
TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: aav:Aave_2635 50S ribosomal protein L31P; Belongs to the bacterial ribosomal protein bL31 family.
   
    0.561
ACS17859.1
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: aav:Aave_3702 single-stranded-DNA-specific exonuclease RecJ.
 
   
 0.427
ACS20156.1
PFAM: HI0933 family protein; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: dia:Dtpsy_2335 HI0933 family protein.
       0.423
ACS16717.1
TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pol:Bpro_0113 ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
 
     0.410
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: aav:Aave_1181 50S ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.
  
    0.410
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
    0.401
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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