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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20184.1PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: aav:Aave_2243 protein of unknown function DUF893, YccS/YhfK. (746 aa)    
Predicted Functional Partners:
ACS20185.1
PFAM: MscS Mechanosensitive ion channel; KEGG: reu:Reut_B4345 MscS mechanosensitive ion channel.
 
     0.817
ACS20183.1
PFAM: inositol monophosphatase; KEGG: dia:Dtpsy_0963 inositol-phosphate phosphatase.
       0.780
ACS18778.1
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.706
ACS18892.1
KEGG: hypothetical protein.
    
   0.594
ACS22515.1
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: pna:Pnap_0406 hypothetical protein.
  
     0.573
ACS22516.1
TIGRFAM: conserved repeat domain protein; KEGG: pna:Pnap_0405 hypothetical protein.
  
     0.570
trmJ
RNA methyltransferase, TrmH family, group 1; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
       0.551
ACS22514.1
TIGRFAM: conserved repeat domain protein; KEGG: pna:Pnap_0407 hypothetical protein.
  
     0.514
ACS22517.1
KEGG: pna:Pnap_0404 hypothetical protein.
  
     0.510
ACS18175.1
KEGG: nmu:Nmul_A2358 hypothetical protein.
  
    0.467
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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