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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20220.1Transcriptional regulator, RpiR family; PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: hypothetical protein. (288 aa)    
Predicted Functional Partners:
ACS20219.1
PFAM: aminotransferase class-III; KEGG: vei:Veis_1705 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.722
ACS22581.1
PFAM: sugar isomerase (SIS); KEGG: swi:Swit_1822 RpiR family transcriptional regulator.
 
   
 0.695
ACS20221.1
KEGG: pol:Bpro_2330 hypothetical protein.
       0.516
ACS20217.1
KEGG: dac:Daci_2801 Asp/Glu racemase.
       0.423
ACS20218.1
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: dac:Daci_2798 extracellular solute-binding protein.
       0.421
ACS20031.1
PFAM: PfkB domain protein; KEGG: pol:Bpro_1737 PfkB.
 
   
 0.406
ACS19621.1
Beta-aspartyl-peptidase; PFAM: peptidase T2 asparaginase 2; KEGG: vei:Veis_4589 peptidase T2, asparaginase 2.
  
    0.404
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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