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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20333.1PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_2807 TonB-dependent receptor. (702 aa)    
Predicted Functional Partners:
ACS19021.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mpt:Mpe_A1495 TonB-dependent siderophore receptor, putative.
 
  
 0.785
ACS18457.1
TIGRFAM: TonB family protein; KEGG: aav:Aave_3311 TonB family protein.
 
 
 0.745
ACS19736.1
TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; KEGG: dia:Dtpsy_2263 protein TolA.
  
 
 0.701
ACS17587.1
TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like.
  
 
 0.694
ACS18287.1
KEGG: dia:Dtpsy_1044 hypothetical protein.
  
 
 0.694
ACS18810.1
KEGG: pol:Bpro_2620 hypothetical protein.
  
 
 0.694
ACS20538.1
KEGG: dia:Dtpsy_1044 hypothetical protein.
  
 
 0.694
ACS17771.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_0192 TonB-dependent siderophore receptor.
 
  
 0.652
ACS20332.1
PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_1684 auxin efflux carrier.
       0.640
ACS17773.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: har:HEAR1368 putative ferrisiderophore receptor.
 
  
 0.633
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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