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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20336.1PFAM: regulatory protein TetR; KEGG: pol:Bpro_1669 transcriptional regulator, TetR family. (225 aa)    
Predicted Functional Partners:
msrA-2
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.703
ACS20337.1
PFAM: Methyltransferase type 11; Methyltransferase type 12; protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: rfr:Rfer_2602 protein-L-isoaspartate(D-aspartate) O-methyltransferase.
   
   0.654
ACS18284.1
KEGG: rfr:Rfer_2980 putative signal peptide protein.
  
     0.604
ACS20339.1
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC.
 
   
 0.576
ACS20338.1
SMART: Rhodanese domain protein; KEGG: dia:Dtpsy_1836 rhodanese domain protein.
       0.554
ACS20334.1
KEGG: pol:Bpro_1682 hypothetical protein.
       0.521
ACS18052.1
KEGG: pol:Bpro_3636 putative transmembrane protein.
  
     0.503
ACS20951.1
KEGG: pol:Bpro_1298 hypothetical protein.
  
     0.435
ACS18796.1
KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein.
  
 
 
 0.416
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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