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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20369.1KEGG: aav:Aave_3997 hypothetical protein. (288 aa)    
Predicted Functional Partners:
ACS18878.1
PFAM: type III restriction protein res subunit; DNA primase small subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; KEGG: tmz:Tmz1t_0307 type III restriction protein res subunit.
  
    0.903
ACS19715.1
KEGG: vei:Veis_3631 hypothetical protein.
  
     0.681
ACS17001.1
TIGRFAM: polyhydroxyalkanoic acid system protein; KEGG: pna:Pnap_3503 putative polyhydroxyalkanoic acid system protein.
  
     0.662
ACS18426.1
PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3076 major facilitator superfamily MFS_1.
  
     0.660
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.641
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.625
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.619
ACS17013.1
TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated.
  
     0.604
ACS17927.1
KEGG: xcc:XCC0033 hypothetical protein.
  
     0.579
ACS21390.1
KEGG: dia:Dtpsy_0437 hypothetical protein.
  
     0.561
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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