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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20407.1TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rfr:Rfer_2702 HAD family hydrolase. (229 aa)    
Predicted Functional Partners:
ACS20408.1
TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: pol:Bpro_1587 peptidase M1, alanyl aminopeptidase.
       0.852
prfB
Conserved hypothetical protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
     
 0.826
ACS20409.1
Hypothetical protein.
       0.658
ACS19975.1
PFAM: major facilitator superfamily MFS_1; nucleoside:H symporter; KEGG: reu:Reut_A1258 MFS family nucleoside/H(+) symporter.
  
  
 0.635
fbp-2
PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: pol:Bpro_1586 fructose-1,6-bisphosphatase.
       0.546
queG
Iron-sulfur cluster binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.
      0.524
ACS20405.1
PFAM: filamentation induced by cAMP protein Fic; KEGG: pna:Pnap_4423 filamentation induced by cAMP protein Fic.
       0.486
ACS18630.1
KEGG: rfr:Rfer_2156 malto-oligosyltrehalose synthase; TIGRFAM: malto-oligosyltrehalose synthase; 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
   
 0.482
ACS18626.1
KEGG: rfr:Rfer_2160 trehalose synthase-like; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; aminoglycoside phosphotransferase; SMART: alpha amylase catalytic sub domain.
  
  
 0.449
ACS17690.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.448
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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