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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20444.1PFAM: conserved hypothetical protein; KEGG: vei:Veis_4279 hypothetical protein. (330 aa)    
Predicted Functional Partners:
ACS20443.1
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: mpt:Mpe_A3670 IclR family transcriptional regulator.
       0.773
ACS20445.1
KEGG: vei:Veis_4280 succinate-semialdehyde dehydrogenase (NAD(P)(+)).
       0.740
ACS20446.1
PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_4281 AMP-dependent synthetase and ligase.
       0.740
ACS20447.1
PFAM: protein of unknown function DUF81; KEGG: sit:TM1040_0154 hypothetical protein.
       0.718
ACS17902.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein.
 
    0.698
ACS16980.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pna:Pnap_3237 hypothetical protein.
 
    0.695
ACS22938.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: vei:Veis_4018 hypothetical protein.
 
    0.694
ACS22589.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_3272 hypothetical protein.
 
    0.661
ACS18858.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_3009 protein of unknown function DUF112, transmembrane.
 
    0.585
ACS20448.1
KEGG: xom:XOO_3046 hypothetical protein.
       0.571
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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