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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20467.1TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; Pertactin; KEGG: rme:Rmet_0614 outer membrane autotransporter barrel. (1055 aa)    
Predicted Functional Partners:
ACS19142.1
KEGG: bur:Bcep18194_B0491 hypothetical protein.
  
     0.759
ACS16835.1
KEGG: cja:CJA_0124 hypothetical protein.
  
     0.734
ACS21383.1
KEGG: sbn:Sbal195_2514 hypothetical protein.
  
   
 0.733
ACS21916.1
Putative membrane protein involved in toxin uptake; KEGG: dac:Daci_2082 hypothetical protein.
  
     0.723
ACS17140.1
KEGG: aav:Aave_0425 hypothetical protein.
  
     0.715
ACS21072.1
KEGG: dac:Daci_2082 hypothetical protein.
  
     0.710
ACS19573.1
KEGG: pol:Bpro_4259 putative lipoprotein.
  
     0.708
ACS20210.1
PFAM: YadA domain protein; Hep_Hag repeat-containing protein; Haemagluttinin domain protein; KEGG: bpl:BURPS1106A_2083 putative outer membrane protein.
  
   
 0.705
ACS21618.1
Hypothetical protein; KEGG: bmj:BMULJ_02752 glucoamylase.
  
     0.705
ACS16920.1
PFAM: O-antigen polymerase; KEGG: har:HEAR0457 hypothetical protein.
  
    0.697
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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