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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20474.1SMART: phospholipase D/Transphosphatidylase; KEGG: bac:BamMC406_6428 phospholipase D/transphosphatidylase. (691 aa)    
Predicted Functional Partners:
ACS20475.1
PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: bac:BamMC406_6427 Sel1 domain-containing protein.
 
   
 0.791
ACS20476.1
PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: bac:BamMC406_6427 Sel1 domain-containing protein.
 
   
 0.707
ACS20473.1
TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_3347 rhs element Vgr protein.
     
 0.622
ACS20477.1
PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: bxe:Bxe_B2593 putative lipoprotein.
 
   
 0.621
ACS18778.1
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
 
 0.596
ACS19057.1
KEGG: bxe:Bxe_A1211 putative phage-related protein.
 
     0.428
ACS21063.1
PFAM: TadE family protein; KEGG: dac:Daci_2065 TadE family protein.
  
     0.401
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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