close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20493.1PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: pna:Pnap_1057 protein of unknown function, zinc metallopeptidase putative. (295 aa)    
Predicted Functional Partners:
ACS20492.1
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: pol:Bpro_1516 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family.
       0.690
dcd
Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP.
       0.630
ACS19293.1
PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase putative.
 
     0.572
ACS18443.1
PFAM: Transglycosylase-associated protein; KEGG: bpy:Bphyt_4202 transglycosylase-associated protein.
 
  
 0.416
ACS21552.1
PFAM: Peptidoglycan-binding LysM; transport-associated; SMART: Peptidoglycan-binding LysM; KEGG: hypothetical protein.
 
     0.415
ACS20495.1
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
       0.409
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.