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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20507.1PFAM: ThiJ/PfpI domain protein; KEGG: pde:Pden_4364 ThiJ/PfpI domain protein. (385 aa)    
Predicted Functional Partners:
ACS18113.1
PFAM: ThiJ/PfpI domain protein; KEGG: rfr:Rfer_2521 ThiJ/PfpI.
  
     0.761
ACS18112.1
Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: aav:Aave_1966 AraC family transcriptional regulator.
  
     0.752
ACS20506.1
Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_B2747 transcriptional regulator.
 
    
0.689
ACS22399.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: reu:Reut_C5976 transcriptional regulator.
  
     0.605
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.561
ACS20505.1
KEGG: aav:Aave_1137 hypothetical protein.
       0.561
ACS22060.1
KEGG: mpt:Mpe_A2206 hypothetical protein.
  
    0.496
ACS17144.1
Acetyltransferase; KEGG: psa:PST_4142 predicted acetyltransferase.
  
    0.442
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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