close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20549.1PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: aav:Aave_1098 permease for cytosine/purines, uracil, thiamine, allantoin. (497 aa)    
Predicted Functional Partners:
ACS20550.1
PFAM: Asp/Glu/hydantoin racemase; KEGG: aav:Aave_1097 Asp/Glu racemase.
 
     0.901
ACS20555.1
TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: dac:Daci_2107 xanthine permease.
 
  
 0.659
ACS22193.1
TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: vei:Veis_0725 dihydropyrimidinase.
 
  
 0.659
ACS20890.1
TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pol:Bpro_0551 dihydropyrimidinase.
 
  
 0.657
ACS20889.1
PFAM: Asp/Glu/hydantoin racemase; KEGG: pol:Bpro_0552 Asp/Glu racemase.
 
     0.592
ACS20026.1
KEGG: bbt:BBta_3190 hypothetical protein.
 
     0.574
ACS20542.1
KEGG: dia:Dtpsy_1036 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; OHCU decarboxylase; PFAM: peptidase M20; peptidase dimerisation domain protein.
 
  
 0.574
ACS20551.1
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: aav:Aave_1096 GntR family transcriptional regulator.
       0.552
ACS22615.1
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bav:BAV0626 hydantoinase.
 
  
 0.522
ACS18237.1
KEGG: aav:Aave_4755 amidase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.
 
  
 0.505
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.