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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20550.1PFAM: Asp/Glu/hydantoin racemase; KEGG: aav:Aave_1097 Asp/Glu racemase. (245 aa)    
Predicted Functional Partners:
ACS20541.1
Urate catabolism protein; KEGG: aav:Aave_1111 polysaccharide deacetylase; TIGRFAM: urate catabolism protein; PFAM: polysaccharide deacetylase.
 
  
  0.953
ACS20026.1
KEGG: bbt:BBta_3190 hypothetical protein.
  
  
 
0.925
ACS22055.1
TIGRFAM: OHCU decarboxylase; KEGG: mrd:Mrad2831_5850 hypothetical protein.
 
  
  0.921
ACS20549.1
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: aav:Aave_1098 permease for cytosine/purines, uracil, thiamine, allantoin.
 
     0.901
ACS20551.1
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: aav:Aave_1096 GntR family transcriptional regulator.
 
     0.770
ACS17092.1
PFAM: polysaccharide deacetylase; KEGG: vei:Veis_3554 hypothetical protein.
 
     0.503
ACS20151.1
KEGG: pol:Bpro_1010 twin-arginine translocation pathway signal.
 
     0.483
ACS17093.1
KEGG: rpb:RPB_2080 hypothetical protein.
 
      0.471
ACS20888.1
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: pol:Bpro_0549 transcriptional regulator, GntR family.
 
     0.461
ACS20153.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_1008 binding-protein-dependent transport systems inner membrane component.
 
     0.419
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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