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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20564.1PFAM: protein of unknown function UPF0118; KEGG: mms:mma_3509 hypothetical protein. (360 aa)    
Predicted Functional Partners:
ACS18892.1
KEGG: hypothetical protein.
    
   0.594
ACS20563.1
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dac:Daci_0236 GntR family transcriptional regulator.
       0.551
ACS20562.1
PFAM: sodium:dicarboxylate symporter; KEGG: dac:Daci_0237 C4-dicarboxylate transporter DctA; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.550
ACS20565.1
KEGG: rso:RS05215 hypothetical protein.
       0.468
ACS20566.1
PFAM: Carotenoid oxygenase; KEGG: rpi:Rpic_3919 carotenoid oxygenase.
       0.452
ACS20561.1
PFAM: glycosyl transferase family 2; KEGG: bar:GBAA3480 glycosyl transferase, group 2 family protein/polysaccharide deacetylase family protein.
  
  
 0.409
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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