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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20566.1PFAM: Carotenoid oxygenase; KEGG: rpi:Rpic_3919 carotenoid oxygenase. (499 aa)    
Predicted Functional Partners:
ACS20565.1
KEGG: rso:RS05215 hypothetical protein.
 
   
 0.849
ACS19414.1
SMART: Ankyrin; KEGG: pol:Bpro_4103 ankyrin.
  
 
 0.506
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
     
 0.487
ACS17166.1
PFAM: Polypeptide-transport-associated domain protein ShlB-type; surface antigen variable number repeat protein; KEGG: cak:Caul_4107 polypeptide-transport-associated domain-containing protein.
  
     0.481
ACS17010.1
PFAM: acyl-coA-binding protein ACBP; KEGG: dia:Dtpsy_0446 acyl-coA-binding protein ACBP.
     
 0.467
ACS20562.1
PFAM: sodium:dicarboxylate symporter; KEGG: dac:Daci_0237 C4-dicarboxylate transporter DctA; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
    
 0.465
ACS17715.1
PFAM: ABC transporter domain protein; ABC transporter related; SbmABacA family protein; SMART: AAA ATPase; KEGG: rfr:Rfer_0735 ABC transporter-like.
  
  
  0.459
ACS20564.1
PFAM: protein of unknown function UPF0118; KEGG: mms:mma_3509 hypothetical protein.
       0.452
ACS20816.1
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: tmz:Tmz1t_1763 transcriptional regulator, Crp/Fnr family.
  
   
 0.449
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
     
 0.432
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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