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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20597.1KEGG: smt:Smal_0572 hypothetical protein. (134 aa)    
Predicted Functional Partners:
ACS20596.1
PFAM: carbon starvation protein CstA; KEGG: aav:Aave_4228 carbon starvation protein CstA.
       0.497
ACS20598.1
PFAM: NLP/P60 protein; KEGG: ajs:Ajs_0001 NLP/P60 protein.
       0.490
ACS20599.1
PFAM: Domain of unknown function DUF1801; KEGG: pol:Bpro_1381 hypothetical protein.
       0.490
ACS20595.1
PFAM: protein of unknown function DUF466; KEGG: bph:Bphy_6472 hypothetical protein.
       0.485
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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