close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20630.1KEGG: bja:bll3019 hypothetical protein. (128 aa)    
Predicted Functional Partners:
ACS18242.1
KEGG: ara:Arad_2792 hypothetical protein.
  
    0.756
ACS22314.1
PFAM: B3/4 domain protein; KEGG: ara:Arad_3110 hypothetical protein.
 
     0.696
ACS19401.1
KEGG: dar:Daro_0369 hypothetical protein.
  
     0.672
ACS20631.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mmw:Mmwyl1_2496 helix-turn-helix domain-containing protein.
 
     0.597
ACS22373.1
PFAM: GCN5-related N-acetyltransferase; KEGG: bch:Bcen2424_3481 GCN5-related N-acetyltransferase.
 
     0.579
ACS20629.1
PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA1808 transporter.
     
 0.569
ACS21588.1
KEGG: mxa:MXAN_6210 hypothetical protein.
  
     0.529
nuoD
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
  
  
 0.497
ACS20628.1
KEGG: pol:Bpro_1735 hypothetical protein.
       0.480
ACS18089.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dac:Daci_2438 XRE family transcriptional regulator.
  
     0.458
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.