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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20656.1PFAM: 2OG-Fe(II) oxygenase; KEGG: pag:PLES_07361 putative iron/ascorbate oxidoreductase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (339 aa)    
Predicted Functional Partners:
ACS20655.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pag:PLES_07351 putative ATP-binding component of ABC transporter.
 
    0.807
ACS20654.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA4193 ABC transporter permease.
  
    0.796
ACS20653.1
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pag:PLES_07331 putative permease of ABC transporter.
  
    0.761
ACS18892.1
KEGG: hypothetical protein.
    
   0.572
ACS20652.1
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: pae:PA4195 binding protein component of ABC transporter; Belongs to the bacterial solute-binding protein 3 family.
  
    0.529
ACS19802.1
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta-ketoacyl synthase; aminotransferase class-III; Acyl transferase; phosphopantetheine-binding; KEGG: bph:Bphy_1672 amino acid adenylation domain-containing protein.
    
 
 0.432
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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