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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20685.1TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: pnu:Pnuc_1109 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (957 aa)    
Predicted Functional Partners:
ACS20686.1
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: pna:Pnap_0825 NADH dehydrogenase (quinone).
 
 0.998
ACS20673.1
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: pna:Pnap_0837 formate dehydrogenase, gamma subunit.
 
 
 0.984
ACS20675.1
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pna:Pnap_0835 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
 
 0.983
ACS19640.1
KEGG: rme:Rmet_0557 formate dehydrogenase delta subunit.
  
 0.981
ACS19636.1
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: bbr:BB1323 formate dehydrogenase subunit gamma.
 0.979
ACS19637.1
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mpt:Mpe_A3709 NADH dehydrogenase (quinone).
 
 0.974
ACS20676.1
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: pna:Pnap_0834 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 
0.927
ACS19638.1
TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: mpt:Mpe_A3710 NAD-dependent formate dehydrogenase alpha subunit.
  
  
 
0.911
ACS18351.1
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
    
  0.907
kynB
Arylformamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
    
  0.902
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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