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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20689.1PFAM: Patatin; KEGG: vei:Veis_4479 patatin. (397 aa)    
Predicted Functional Partners:
ACS22412.1
PFAM: TRAG family protein; KEGG: bbt:BBta_p0247 putative type IV secretory pathway protein VirD4.
    
   0.578
ACS19824.1
KEGG: rfr:Rfer_1225 hypothetical protein.
  
     0.573
ACS20688.1
Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.563
ACS21145.1
KEGG: mpt:Mpe_B0617 hypothetical protein.
  
     0.558
ACS20021.1
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: rfr:Rfer_2476 DNA internalization-related competence protein ComEC/Rec2.
     
 0.505
ACS19823.1
KEGG: dia:Dtpsy_1766 hypothetical protein.
 
     0.488
ACS20687.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pna:Pnap_0823 LysR family transcriptional regulator.
       0.482
ACS21144.1
KEGG: mpt:Mpe_B0618 hypothetical protein.
 
     0.430
ACS21893.1
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_4782 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.413
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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