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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20702.1KEGG: pna:Pnap_0959 putative lipoprotein. (157 aa)    
Predicted Functional Partners:
ACS20050.1
PFAM: NlpBDapX family lipoprotein; KEGG: rfr:Rfer_2096 NlpBDapX lipoprotein.
  
 
 0.760
ACS17154.1
PFAM: sodium/hydrogen exchanger; KEGG: aav:Aave_0435 sodium/hydrogen exchanger.
  
     0.723
ACS20703.1
KEGG: pol:Bpro_0907 hypothetical protein.
 
     0.681
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.679
ACS21638.1
PFAM: Domain of unknown function DUF1840; KEGG: dac:Daci_1148 hypothetical protein.
  
     0.661
ACS17605.1
KEGG: cti:RALTA_A2653 putative histone H1/H5 family protein, HCT subfamily.
  
     0.658
ACS20325.1
PFAM: OmpA/MotB domain protein; KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein.
  
  
 0.628
ACS18052.1
KEGG: pol:Bpro_3636 putative transmembrane protein.
  
     0.618
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.604
bamA-2
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.604
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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