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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20723.1PFAM: protein of unknown function DUF1328; KEGG: mpt:Mpe_A2904 hypothetical protein. (54 aa)    
Predicted Functional Partners:
ACS18421.1
PFAM: CsbD family protein; KEGG: efe:EFER_4136 putative stress response protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.922
ACS20727.1
PFAM: Ferritin Dps family protein; Rubrerythrin; KEGG: aav:Aave_3866 ferritin, Dps family protein.
  
    0.882
ACS20370.1
KEGG: dac:Daci_2123 putative lipoprotein.
   
    0.738
ACS20231.1
KEGG: dia:Dtpsy_2105 hypothetical protein.
  
    0.706
ACS22319.1
KEGG: rme:Rmet_5324 putative signal peptide protein.
  
    0.706
ACS18420.1
KEGG: ajs:Ajs_0255 hypothetical protein.
  
  
 0.633
ACS18643.1
KEGG: aav:Aave_0313 hypothetical protein.
  
  
 0.633
ACS18644.1
KEGG: aav:Aave_0313 hypothetical protein.
  
  
 0.633
ACS22569.1
KEGG: mpt:Mpe_A1028 hypothetical protein.
  
  
 0.633
ACS20724.1
KEGG: aav:Aave_3865 hypothetical protein.
       0.615
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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