STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20734.1PFAM: NUDIX hydrolase; KEGG: lch:Lcho_4015 NUDIX hydrolase. (157 aa)    
Predicted Functional Partners:
ACS20732.1
PFAM: GTP cyclohydrolase I; KEGG: pol:Bpro_0869 GTP cyclohydrolase.
    
 0.972
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
   0.930
ACS20709.1
PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: vei:Veis_1235 putative 6-pyruvoyl tetrahydropterin synthase.
    
  0.903
ACS20611.1
KEGG: pzu:PHZ_c2444 alkaline phosphatase D.
     
  0.900
ACS22250.1
KEGG: dia:Dtpsy_2905 alkaline phosphatase.
     
  0.900
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
 
 0.891
ACS20733.1
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: aav:Aave_3633 endonuclease/exonuclease/phosphatase.
 
    0.845
ACS17588.1
PFAM: ribonuclease II; KEGG: ajs:Ajs_3654 ribonuclease II.
 
 
 0.773
ACS20736.1
PFAM: protein of unknown function DUF502; KEGG: dac:Daci_5454 hypothetical protein.
 
     0.743
ACS20737.1
TIGRFAM: regulatory protein, FmdB family; KEGG: aav:Aave_3639 FmdB family regulatory protein.
       0.705
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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