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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20737.1TIGRFAM: regulatory protein, FmdB family; KEGG: aav:Aave_3639 FmdB family regulatory protein. (112 aa)    
Predicted Functional Partners:
ACS20736.1
PFAM: protein of unknown function DUF502; KEGG: dac:Daci_5454 hypothetical protein.
       0.848
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.742
ACS20738.1
PFAM: Na+/solute symporter; KEGG: dac:Daci_5457 Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.721
ACS20734.1
PFAM: NUDIX hydrolase; KEGG: lch:Lcho_4015 NUDIX hydrolase.
       0.705
ACS20733.1
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: aav:Aave_3633 endonuclease/exonuclease/phosphatase.
       0.704
ubiB
2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
       0.614
ACS20740.1
KEGG: aav:Aave_3642 hypothetical protein.
       0.614
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.554
ACS20732.1
PFAM: GTP cyclohydrolase I; KEGG: pol:Bpro_0869 GTP cyclohydrolase.
       0.527
ACS20731.1
PFAM: BLUF domain protein; KEGG: pol:Bpro_0870 sensors of blue-light using FAD.
       0.521
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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