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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20744.1PFAM: histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein. (145 aa)    
Predicted Functional Partners:
ACS20745.1
PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like.
 
 
 
 0.891
ACS20743.1
PFAM: protein of unknown function DUF971; KEGG: rfr:Rfer_1290 hypothetical protein.
 
     0.872
ACS17427.1
PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; KEGG: gbe:GbCGDNIH1_0743 glycosyltransferase.
  
 
 0.619
ACS20668.1
PFAM: SlyX family protein; KEGG: bbr:BB1266 hypothetical protein.
  
    0.596
ubiE-2
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
   
   0.579
ACS18878.1
PFAM: type III restriction protein res subunit; DNA primase small subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; KEGG: tmz:Tmz1t_0307 type III restriction protein res subunit.
  
 
  0.536
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.535
ACS20734.1
PFAM: NUDIX hydrolase; KEGG: lch:Lcho_4015 NUDIX hydrolase.
 
 
 0.501
ACS20741.1
PFAM: import inner membrane translocase subunit Tim44; KEGG: pna:Pnap_0782 import inner membrane translocase, subunit Tim44.
       0.491
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
  0.485
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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