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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20822.1PFAM: Cupin 2 conserved barrel domain protein; Cupin domain protein; KEGG: pol:Bpro_3463 cupin 2, conserved barrel. (166 aa)    
Predicted Functional Partners:
ACS20821.1
TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: dia:Dtpsy_0778 glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily.
       0.757
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
       0.650
prmC
Modification methylase, HemK family; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
       0.650
ACS21289.1
KEGG: rpi:Rpic_0523 hypothetical protein.
  
     0.556
ACS20823.1
PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: pna:Pnap_0743 hypothetical protein.
       0.479
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
       0.454
ACS22730.1
Transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; Tetratricopeptide TPR_4; KEGG: bja:bll1195 transcriptional regulator.
  
     0.429
ACS18875.1
KEGG: hch:HCH_01177 hypothetical protein.
  
    0.409
ACS22822.1
PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: mlo:mll4858 ubiquinone/menaquinone biosynthesis methyltransferase.
  
     0.401
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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