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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20874.1PFAM: AsmA family protein; KEGG: mms:mma_3643 AsmA protein. (669 aa)    
Predicted Functional Partners:
ACS18309.1
KEGG: mpt:Mpe_A0046 hypothetical protein.
 
     0.559
ACS21025.1
PFAM: protein of unknown function DUF1428; KEGG: oca:OCAR_4758 RNA signal recognition particle 4.5S RNA.
   
    0.547
ACS19470.1
PFAM: protein of unknown function DUF1458; KEGG: pna:Pnap_0234 hypothetical protein.
   
    0.507
ACS20727.1
PFAM: Ferritin Dps family protein; Rubrerythrin; KEGG: aav:Aave_3866 ferritin, Dps family protein.
 
    0.480
ACS20595.1
PFAM: protein of unknown function DUF466; KEGG: bph:Bphy_6472 hypothetical protein.
  
     0.476
ACS16674.1
KEGG: mpt:Mpe_A0046 hypothetical protein.
 
     0.459
flhD
Flagellar transcriptional activator; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family.
  
     0.451
ACS20873.1
PFAM: UspA domain protein; KEGG: rfr:Rfer_1926 hypothetical protein.
       0.447
ACS20070.1
PFAM: protein of unknown function DUF455; KEGG: aav:Aave_1317 hypothetical protein.
  
    0.444
ACS20723.1
PFAM: protein of unknown function DUF1328; KEGG: mpt:Mpe_A2904 hypothetical protein.
 
    0.444
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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