close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20926.1PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: ajs:Ajs_3085 IstB ATP binding domain-containing protein. (254 aa)    
Predicted Functional Partners:
ACS20927.1
PFAM: Integrase catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region.
 
  
 0.953
ACS18748.1
PFAM: Integrase catalytic region; KEGG: mms:mma_2792 transposase IstA.
 
  
 0.810
ACS17336.1
PFAM: Integrase catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region.
 
  
 0.804
ACS17543.1
PFAM: Integrase catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region.
 
  
 0.804
ACS22437.1
PFAM: Integrase catalytic region; KEGG: psa:PST_3409 ISPsy14, transposase.
 
  
 0.803
ACS18472.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.760
ACS19327.1
Transposase; KEGG: eba:p2A256 transposase.
 
     0.727
ACS17334.1
KEGG: net:Neut_1121 hypothetical protein.
  
 
 0.642
ACS20925.1
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: smt:Smal_2252 transcriptional regulator, AraC family.
       0.467
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.435
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.