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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20929.1PFAM: protein of unknown function DUF1656; KEGG: bav:BAV2023 component of multidrug efflux system. (70 aa)    
Predicted Functional Partners:
ACS20928.1
PFAM: Fusaric acid resistance protein conserved region; KEGG: bbr:BB3081 hypothetical protein.
     
 0.806
ACS20930.1
PFAM: secretion protein HlyD family protein; KEGG: bpt:Bpet2608 HlyD family secretion protein.
       0.732
ACS20931.1
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bav:BAV2025 outer membrane multidrug efflux protein.
     
 0.719
ACS20932.1
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_7085 LysR family transcriptional regulator.
       0.503
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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