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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20989.1PFAM: protein of unknown function DUF962; KEGG: pol:Bpro_1273 protein of unknown function DUF962. (154 aa)    
Predicted Functional Partners:
ACS18321.1
KEGG: dac:Daci_4965 membrane protein.
  
     0.590
ACS20987.1
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: lch:Lcho_4096 histidine kinase.
 
     0.570
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
       0.536
ACS20988.1
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: rru:Rru_A3229 two component LuxR family transcriptional regulator.
       0.514
ACS17468.1
KEGG: dia:Dtpsy_0575 putative hydrolase.
  
     0.500
ACS21403.1
PFAM: regulatory protein TetR; KEGG: pna:Pnap_3496 TetR family transcriptional regulator.
  
     0.416
ACS22297.1
PFAM: peptidase domain protein; KEGG: rde:RD1_1585 VCBS repeat domain protein.
  
     0.408
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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