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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS20997.1KEGG: pol:Bpro_1250 putative transmembrane protein. (73 aa)    
Predicted Functional Partners:
ACS20995.1
KEGG: ajs:Ajs_3529 hypothetical protein.
 
     0.900
ACS20994.1
PFAM: cytochrome oxidase assembly; KEGG: aav:Aave_3900 cytochrome oxidase assembly.
 
    0.860
ACS20996.1
KEGG: pna:Pnap_0884 putative transmembrane cytochrome oxidase.
 
     0.807
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.700
ACS20999.1
KEGG: pol:Bpro_1248 hypothetical protein.
  
     0.674
ACS20703.1
KEGG: pol:Bpro_0907 hypothetical protein.
  
     0.651
ACS18122.1
KEGG: rfr:Rfer_1400 hypothetical protein.
  
     0.612
ACS20992.1
PFAM: electron transport protein SCO1/SenC; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: rfr:Rfer_1690 electron transport protein SCO1/SenC.
       0.601
ACS18077.1
PFAM: protein of unknown function DUF339; KEGG: pol:Bpro_3604 protein of unknown function DUF339.
  
     0.598
ACS20991.1
KEGG: dac:Daci_3654 hypothetical protein.
       0.574
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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