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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21033.1PFAM: band 7 protein; SMART: band 7 protein; KEGG: pol:Bpro_1471 band 7 protein. (382 aa)    
Predicted Functional Partners:
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
  
 0.902
ACS21032.1
PFAM: protein of unknown function UPF0027; KEGG: pna:Pnap_0498 hypothetical protein.
 
   0.872
rtcA
RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
 
 
 0.857
ACS21031.1
KEGG: hch:HCH_10017 hypothetical protein.
 
     0.736
ACS18011.1
PFAM: Rhomboid family protein; KEGG: dac:Daci_5314 rhomboid family protein.
  
 0.673
ACS21195.1
KEGG: aeh:Mlg_1537 hypothetical protein.
  
  
 0.580
ACS20983.1
PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1670 peptidase M16-like.
  
 0.529
ACS19414.1
SMART: Ankyrin; KEGG: pol:Bpro_4103 ankyrin.
 
 
 0.523
ACS20984.1
PFAM: peptidase M16 domain protein; KEGG: vei:Veis_4762 peptidase M16 domain-containing protein; Belongs to the peptidase M16 family.
  
 0.521
ACS22792.1
KEGG: pmr:PMI0559 hypothetical protein.
  
    0.499
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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