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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS21062.1KEGG: bam:Bamb_1409 hypothetical protein. (139 aa)    
Predicted Functional Partners:
ACS21061.1
SMART: Tetratricopeptide domain protein; KEGG: bte:BTH_I2537 TPR domain-containing protein.
  
    0.907
ACS21060.1
PFAM: type II secretion system protein; KEGG: bxe:Bxe_A2794 putative tight adherence TadC related transmembrane protein.
  
  
 0.859
ACS21059.1
PFAM: type II secretion system protein; KEGG: bpy:Bphyt_1656 type II secretion system protein.
  
    0.818
ACS21063.1
PFAM: TadE family protein; KEGG: dac:Daci_2065 TadE family protein.
  
    0.754
ACS21057.1
Response regulator receiver protein; KEGG: bpy:Bphyt_1654 putative pilus assembly protein, CpaE-like protein.
  
  
 0.685
ACS21058.1
PFAM: type II secretion system protein E; KEGG: bxe:Bxe_A2796 putative type II/IV secretion ATPase protein, TadA.
  
    0.529
ACS21056.1
PFAM: type II and III secretion system protein; KEGG: bxe:Bxe_A2798 putative outer membrane channel signal peptide protein, CpaC like; Belongs to the bacterial secretin family.
  
  
 0.520
ACS21055.1
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: cti:RALTA_B0192 putative Flp pilus assembly CpaB.
  
  
 0.508
ACS18178.1
KEGG: pol:Bpro_2554 response regulator receiver domain protein (CheY-like).
  
  
 0.484
ACS21054.1
PFAM: peptidase A24A prepilin type IV; KEGG: bvi:Bcep1808_1484 peptidase A24A, prepilin type IV.
     
 0.474
Your Current Organism:
Variovorax paradoxus S110
NCBI taxonomy Id: 543728
Other names: V. paradoxus S110, Variovorax paradoxus str. S110, Variovorax paradoxus strain S110
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